Installation

To set up the wrapper, clone the repository and then install the Python package and the CMCL ontology.

git clone https://github.com/simphony/SimCMCLkinetics.git
pip install ./SimCMCLkinetics
pico install ./SimCMCLkinetics/cmcl.ontology.yml

Docker

Alternatively, it is possible to execute the wrapper in a Docker container. docker and docker-compose are required. To create the kinetics osp wrapper docker image run:

./docker_install.sh